PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0003s0362.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1840aa    MW: 198704 Da    PI: 6.5093
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0003s0362.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.6e-1013841408126
                            --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHg 26  
                            ykt+lC+ f   G C+yG+rC++aHg
  Sphfalx0003s0362.2.p 1384 YKTRLCNKFNN-GGCPYGARCRYAHG 1408
                            9**********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF104401.8E-8662IPR018848WIYLD domain
PROSITE profilePS5010210.5659391036IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3303.5E-511791254IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549284.53E-511861252IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF902292.98E-713811412IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-1413821412IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.83513831410IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-713831409IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-713841408IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1840 aa     Download sequence    Send to blast
MKADYKERLK IVLQVLQPLQ FSKALIIRTV RNLLNVYGVE AGWSYIEEDE YKNVLNCIVA  60
ERNEKRGQKI SHAPTQTESA GETQHVHESN RRFGKTTGPT QAIHVSPAAE MSTENCAPSH  120
HEDPDSPDIH QHQRWLWSQK IGIPPLACFR ETSPVLGAEE PEVLLGSLGS PGNVTSDTEK  180
SHEDNVPSND KPNREVQDSW DADGSNFPKP SKGRCRIRKA GRSGALLEPR DEAAPAQELM  240
HVSPVSDFEV EGQNQQDLCQ DVSRSAEKLK NDKGGIGEAD WTPKNFFRKV VSDSNQAPIS  300
CQSQSCEQEG GVANDSHDDM DMRGKLGGQI KTRDPLDHRD LPTVKRIVGV KGKRPDQIFP  360
VKKVLNSESD DLAATPLPPK KARLGANAVD IQSCPPVVGG KVPKGSGCGL LSMDSEEKKM  420
VPGNKSSTKL QGVATKARGD QAEGDSLFGI PGVATALVIT RDGTATKEID VGRTTAFKLG  480
GKKGSSSFLQ RQKRSVTIAE DFSNRHISHV DTWSLEACLT RAPPLGSPPS GLRFNAKVSA  540
VTNCSSDHDQ LLVGQGANAG ELVIDPTYTV TKPDTHTVLP LNKVPQPSLS GEVSNHETAR  600
AAGSGIAGSS SNILPELDKY NMQLPSPLSV SELDEAPSPE LPPGFANQIS HKRDLVAAVA  660
LHQPGCAISN LQKLQEHKDF PERAIPGHVW GPVSQVRPTA PILLDNSCTA SAAPCTSGPL  720
QPQSPLLAQS SPIENPSGKL ASVLRPINTS VKSELTPPGP GFQIQSSIPP FMPPRLPPNQ  780
FPSVAGMVSP DLADSLPQRP LPPLPSGGTQ LKQECSFGPL HPPGPSNVFP PEASCLSSPR  840
PTSPHSNNGT QQSSSAIPSG WPSSVPSVPP SQLFPPGMEP VTSMTVTGTP LGSRLSSTAP  900
SPTSLISNSF PPPMGTNSAI PSVGHKGFDA RRDAREHAKS IFVGNIPVGL VNTILVIREA  960
LEAYFKPLEF VPAKSAEIQH ISLYERSTGS YAFAQFSSEV FARIVLDACQ VKSMPLQVNG  1020
VQLSVGRNLK AEMVPPMPRE RMFKGDRVLD PAKILYVGNL PEQWRSEQLL QKQFSEILGG  1080
SNPGADSNFL SEIYILPECV DVYLELSSDV VADALVYKCI KDSKLLESMG DSVFICRHPK  1140
FVPLFALASK STSCTLAIPN QNVEKPLPKD SKLAAEEELA SRWQSTLYVG NLPLTAEAYN  1200
VHDLREVFDR MLCHTLEDKP VVRWVKAVTW PPGRHYAHVE FNSESAANAI MDAYIEQTAE  1260
FCLNDAAFCM FRHQKYVRPG AVYKTTNHGV LNLNLTVEVN QEKKSIKNLS LESQSSEQCL  1320
DALELDGEEG DESLDESVQA VHMDMKPDEM AAAVHAVHAV PALIKGVNEV TEQGNVGGWS  1380
THLYKTRLCN KFNNGGCPYG ARCRYAHGVE ELLRPAPPQM PHAQGRRSAV TPPLGSSSST  1440
GLTTDFTGRQ DTTDTGDEYV DPKSVICVRG VADGLTSFSL KGAMNELFER TLKTTGVLEF  1500
GKHVVRYSQF KDNSKQALVT LLNVEAPTAI LSVVKPLKIA GQPLVILPWS NMQQQKLQPL  1560
PKVNAGQPGF QPTFNLGDTH DVLSSSPGNS RAPHGWLPPS WSGPEQPWSV HPPGLSSVEC  1620
PPHVGQFGPP PQTGMVPLPF LPTQGQPDFG RPPLPSGPLC HPSFGPHNGI RPPPPWTLSP  1680
PIPSIHHLQS PGGDGWPAPP SAWVEPHHGL HPGNFGWRHN EGVLHPDLIS PPLQQHRDGV  1740
HRMHFSHEDT KFRAELLCQS SNKIDKNTGG WLEDDDDEEP GMPASEPATG DGDRRGVDPE  1800
GGRIISEEAS ASNVDPFQHK QTKILSPAKN PSPVGIAIG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-06C3H family protein